File containing the location of the gene loci and the description of their strucuture and of the associated subfeatures (ex. mRNAs, exons, CDSs, etc.).
File containing the sequence of the coding portion (CDS) of the transcribed mRNAs
File containing the Functional annotation of the mRNAs encoded in the gene loci
Complete genome assembly
File containing the integral collection of genomic sequences describing the genome of the species. It contains:
- For pseudomolecule-scale assemblies: all chromosome sequences and all unplaced sequences;
- For diploid pseudomolecule-scale assemblies: all chromosome sequences for both haplotypes and all unplaced sequences;
- For diploid draft assemblies: all sequences of primary assembly and all haplotigs sequences
Genome haplotype 1/2
File containing the collection of pseudomolecule sequences for haplotype 1 or haplotype 2 of a diploid pseudomolecule-scale assembly
File containing the collection of sequences of the transcribed mRNA as concatenation of all the ascribed exons.
File containing the collection of sequences of the translated proteins from the annotated CDS sequences
File containing the positional information regarding all repetitive regions (ex. transposable elements, low complexity regions, etc.)
For pseudomolecule-scale assemblies, this file collects all the assembled genomic sequences that could not be ascribed to any chromosome.